Gets species subset

This function subsets the species list with species occurring in the specified sites

Usage

get_species_subset(species_list, site_vector, trim_sites = FALSE)

Arguments

species_list

a list of species to include in the calculations.

site_vector

a vector with site indexes.

trim_sites

if TRUE, species traits will be trimmed to the specified sites. Default is FALSE.

Value

a list with selected species.

See also

vignette("h-support-functions", package = "gen3sis2")

Examples

if (FALSE) { # \dontrun{
  # mock simulation state
  space <- system.file("extdata/SouthAmerica/species_and_spaces/space_t_2.rds", package = "gen3sis2") |> readRDS()
  
  all_species <- system.file("extdata/SouthAmerica/species_and_spaces/species_t_2.rds", package = "gen3sis2") |> readRDS()
  
  data <- list(
    space = space,
    all_species = all_species
  )
  
  get_species_subset(data$all_species, site_vector = c("841"), trim_sites = T)
} # }